Virus:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Plasmid Preparation:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Recombinant:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
RNAscope:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Blocking Assay:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Staining:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Knock-Out:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
In Situ:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Multiplex Assay:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Sequencing:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Software:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Derivative Assay:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Immunofluorescence:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Marker:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Transgenic Assay:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Construct:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Labeling:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Western Blot:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Incubation:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Immunostaining:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
Transplantation Assay:Article Title: Predicting progression to Alzheimer’s disease with human hippocampal progenitors exposed to serum
Article Snippet: Mouse monoclonal anti-Ki67 (Cell Signaling, #9449, 1:800) was used to assess proliferation (i.e. HPCs in active phases of the cell cycle such as G1, S, G2 and mitosis); rabbit monoclonal anti-CC3 (Cell Signaling, #9664, 1:500) to assess apoptotic cell death; mouse monoclonal anti-Nestin clone 10C2 (Sigma Aldrich, #MAB5326, 1:1000) and rabbit polyclonal anti-Sox2 (SRY-Box Transcription Factor 2) (Sigma Aldrich, #AB5603, 1:1000) to assess neural stemcellness; rabbit polyclonal anti-DCX (Abcam, #ab18723, 1:500) for neuroblasts and mouse monoclonal anti-MAP2 (Abcam, #ab11267, 1:500) for mature neurons.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: Sections were incubated with the following primary antibodies: rabbit polyclonal anti-SOX9 (1:1000 dilution; Millipore), mouse monoclonal anti-phospho-STAT3 (Tyr705) (1:100 dilution; Cell Signaling), mouse monoclonal anti-PML (PG-M3) (1:200 dilution; Santa Cruz Biotechnology), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and rabbit polyclonal anti-Ki67 (1:1000 dilution; Abcam).
Article Title: Hippocampal Transplants of Fetal GABAergic Progenitors Regulate Adult Neurogenesis in Mice with Temporal Lobe Epilepsy
Article Snippet: Type 1 progenitors were identified by immunostaining for GFAP (mouse mAb anti-GFAP; #IF03L, Millipore Sigma) and SOX2 (rabbit polyclonal anti-SOX2 #5603, Millipore Sigma).
Article Title: Subventricular zone cytogenesis provides trophic support for neural repair in a mouse model of stroke
Article Snippet: Sc-28038, Rabbit monoclonal anti-Id2 (Clone 9-2-8) (1:1000) CalBioreagents M213, Rabbit polyclonal anti-Ki67 (1:500) Abcam ab66155, Mouse monoclonal anti-Nestin (clone Rat401 (RUO)) (1:100) BD Pharmingen 556309, Mouse monoclonal anti-NeuN (clone A60) (1:500) Millipore MAB377, Rabbit monoclonal anti-NeuN (clone 27-4) (1:2000) Millipore MABN140, Rabbit polyclonal anti-Olig2 (1:1000) Millipore AB9610, Rabbit monoclonal anti-S100β (clone EP1576Y) (1:1000) Abcam ab52642, Rabbit polyclonal anti-Sox2 (1:1000) Millipore AB5603, Rabbit polyclonal anti-VEGF (1:1000) Millipore ABS82, Rabbit polyclonal anti-VEGF AF647 conjugate (1:1000) Millipore ABS82-AF647, Rabbit polyclonal anti-VEGF (1:250) Sigma 07-1420.
Article Title: High SOX9 Maintains Glioma Stem Cell Activity through a Regulatory Loop Involving STAT3 and PML
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti-SOX9 (1:2000 dilution; Millipore, Burlington, MA, USA), mouse monoclonal anti-STAT3 (1:1000 dilution; Cell Signaling), rabbit monoclonal anti-phospho STAT3 (Tyr705) (1:1000 dilution; Cell Signaling), rabbit polyclonal anti-PML (1:1000 dilution; Bethyl laboratories, Montgomery, TX, USA), rabbit polyclonal anti-SOX2 (1:500 dilution; Millipore), and mouse monoclonal anti-β actin (1:2000 dilution; Sigma-Aldrich).
Article Title: Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal Anti-RFP Rockland Cat# 600-401-379; RRID:AB_2209751 Chicken polyclonal Anti-GFP Aves Labs Cat# GFP-1020; RRID:AB_10000240 Mouse monoclonal Anti-Satb2 Abcam Cat# ab51502; RRID:AB_882455 Rabbit polyclonal Anti-Cux1 Santa Cruz Biotechnology Cat# sc-13024; RRID:AB_2261231 Rat monoclonal Anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal Anti-Foxp2 Santa Cruz Biotechnology Cat# sc-517261; RRID:AB_2721204 Rabbit polyclonal Anti-Tbr1 MilliporeSigma Cat# AB10554; RRID:AB_10806888 Mouse monoclonal Anti-Tle4 Santa Cruz Biotechnology Cat# sc-365406; RRID:AB_10841582 Chicken polyclonal Anti-Tbr2 MilliporeSigma Cat# AB15894; RRID:AB_10615604 Mouse polyclonal Anti-Pax6 MBL International Cat# PD022; RRID:AB_1520876 Rabbit polyclonal Anti-Sox2 MilliporeSigma Cat# AB5603; RRID:AB_2286686 Mouse monoclonal Anti-Nestin Abcam Cat# ab22035; RRID:AB_446723 Chemicals, peptides, and recombinant proteins Cholera Toxin Subunit B (Recombinant), Alexa Fluor 647 Thermo Fisher Scientific Cat# C34778 Experimental models: Organisms/strains Tbr2-2A-FlpO This paper N/A Emx1-IRES-Cre JAX; Gorski et al.22 RRID:IMSR_JAX:005628 Cux1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036300 PlexinD1-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036295 Lhx2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036293 Fezf2-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036296 Tle4-2A-CreER JAX; Matho et al.19 RRID:IMSR_JAX:036298 FSF-tdTomato Matho et al.19 N/A Intersection-Subtraction (IS) JAX; He et al.22; Matho et al.19 RRID:IMSR_JAX:028582 RRID:IMSR_JAX:036760 Software and algorithms Image J National Institutes of Health https://imagej.nih.gov/ij/download.html GraphPad Prism 7 GraphPad https://www.graphpad.com/features Excel 2010 Microsoft https://www.microsoft.com/ en-us/microsoft-365/excel ZEN Software for Image Processing Zeiss https://www.zeiss.com/microscopy/ en/products/software/zeiss-zen.html e1 Neuron 111, 2557–2569.e1–e4, August 16, 2023
Article Title: Fluorescent Protein-Expressing Neural Progenitor Cells as a Tool for Transplantation Studies
Article Snippet: For immunofluorescence, the following primary antibodies were used: mouse monoclonal anti-nestin (1∶400; Pharmingen, San Diego, CA, USA), rabbit polyclonal anti-β-tubulin III (Tuj1 1∶1000; Covance, Freiburg, Germany), rabbit polyclonal anti-Ki67 antigen (1∶500; Novocastra Laboratories Ltd, Newcastle upon Tyne, UK), mouse monoclonal anti-GFAP (1∶400; Chemicon International, Hampshire, UK), rabbit polyclonal anti-microtubule associated protein-2 (MAP2ab, 1∶500; Chemicon International, Hampshire, UK), mouse monoclonal anti-oligodendrocyte marker O4 (1∶500; R&D Systems, Minneapolis, MN, USA), goat polyclonal anti-doublecortin (1∶200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), goat polyclonal anti-GFP (1∶2000; Acris antibodies, San Diego, CA, USA) and rabbit polyclonal anti-Sox2 (1∶1000; Chemicon International, Hampshire, UK).
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